Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu1932Unnamed protein product; Similar to unknown protein. (86 aa)    
Predicted Functional Partners:
plu1931
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
   
 0.930
plu0707
Unnamed protein product; Highly similar to unknown protein.
  
   
 0.585
plu2339
Uncharacterized protein.
  
     0.504
plu3933
Unnamed protein product; Similar to unknown protein.
  
     0.491
plu0706
Unnamed protein product; Highly similar to unknown protein.
  
     0.478
plu0441
Unnamed protein product; Similar to unknown protein.
  
     0.462
plu4118
Unnamed protein product; Similar to unknown protein.
  
     0.460
plu1163
N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
 
     0.443
plu3483
Unnamed protein product; Similar to bacteriophage protein.
  
     0.434
plu0807
Unnamed protein product; Weakly similar to hypothetical protein.
  
     0.422
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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