STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsdCD-serine dehydratase (deaminase) transcriptional activator DsdC; Belongs to the LysR transcriptional regulatory family. (312 aa)    
Predicted Functional Partners:
hcaR
Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.620
plu2225
HTH lysR-type domain-containing protein; Unnamed protein product; Highly similar to probable transcription regulator LysR-type, YnfL of Escherichia coli; Belongs to the LysR transcriptional regulatory family.
  
     0.601
oxyR
Hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
  
     0.569
abgR
Putative transcriptional regulator AbgR; Belongs to the LysR transcriptional regulatory family.
  
     0.543
plu2792
HTH lysR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.526
plu0410
HTH lysR-type domain-containing protein; Unnamed protein product; Weakly similar to putative LysR-family trancsriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.524
gltB
Glutamate synthase [NADPH] large chain precursor (glutamate synthase alpha subunit) (NADPH-GOGAT) (GLTS alpha chain).
 
   
 0.476
dsdX
DsdX permease.
       0.461
plu1967
OMP_b-brl domain-containing protein; Unnamed protein product; Similar to putative PagC-like membrane protein (virulence-related membrane protein) of Escherichia coli O157:H7.
       0.404
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.