Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sgaBPutative sugar phosphotransferase component II B. (101 aa)    
Predicted Functional Partners:
plu1981
Unnamed protein product; Weakly similar to putative sugar transport protein SgaT of Escherichia coli.
 
 
 0.997
sgcA
Putative phosphotransferase enzyme II, A component SgcA.
 
 
 0.996
ptsH
Phosphocarrier protein HPr (Histidine-containing protein).
    
 0.906
plu1982
Unnamed protein product; Hypothetical gene.
       0.773
fruA
PTS system, fructose-specific IIBC component.
  
   
 0.606
plu0585
Unnamed protein product; Similar to beta-glucoside permease IIABC component (phosphotransferase enzyme II, ABC component). Putative transmembrane protein.
 
   
 0.594
fruB
PTS system, fructose-specific IIA/FPr component.
 
  
 0.490
plu1978
HTH lacI-type domain-containing protein; Unnamed protein product; Similar to LacI-family transcriptional regulatory protein.
       0.466
php
Phosphotriesterase homology protein.
 
     0.413
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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