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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu1994Unnamed protein product; Similar to unknown protein YhfZ of Escherichia coli. (301 aa)    
Predicted Functional Partners:
nadR
Transcriptional regulator NadR.
   
    0.889
plu1996
Ala_racemase_N domain-containing protein; Unnamed protein product; Similar to unknown protein YhfX of Escherichia coli.
 
     0.885
php
Phosphotriesterase homology protein.
 
     0.874
plu1998
Unnamed protein product; Similar to unknown protein YhfU of Escherichia coli.
 
     0.874
plu1999
Unnamed protein product; Similar to putative transport system permease protein YhfT of Escherichia coli.
 
     0.864
plu2000
Aminotran_5 domain-containing protein; Unnamed protein product; Similar to unknown protein YhfS of Escherichia coli.
 
     0.837
plu1995
PRD domain-containing protein; Unnamed protein product; Similar to unknown protein YhfY of Escherichia coli.
  
    0.780
fruA
PTS system, fructose-specific IIBC component.
       0.513
plu1183
UPF0301 protein plu1183; Unnamed protein product; Similar to unknown protein YqgE of Escherichia coli; Belongs to the UPF0301 (AlgH) family.
   
    0.489
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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