STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu1995PRD domain-containing protein; Unnamed protein product; Similar to unknown protein YhfY of Escherichia coli. (118 aa)    
Predicted Functional Partners:
plu1994
Unnamed protein product; Similar to unknown protein YhfZ of Escherichia coli.
  
    0.801
fruA
PTS system, fructose-specific IIBC component.
  
  
 0.768
fruB
PTS system, fructose-specific IIA/FPr component.
  
 
 0.717
plu0585
Unnamed protein product; Similar to beta-glucoside permease IIABC component (phosphotransferase enzyme II, ABC component). Putative transmembrane protein.
  
 
 0.716
plu1998
Unnamed protein product; Similar to unknown protein YhfU of Escherichia coli.
  
    0.597
php
Phosphotriesterase homology protein.
       0.590
plu1996
Ala_racemase_N domain-containing protein; Unnamed protein product; Similar to unknown protein YhfX of Escherichia coli.
       0.559
plu1999
Unnamed protein product; Similar to putative transport system permease protein YhfT of Escherichia coli.
       0.549
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.