STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2000Aminotran_5 domain-containing protein; Unnamed protein product; Similar to unknown protein YhfS of Escherichia coli. (378 aa)    
Predicted Functional Partners:
plu1999
Unnamed protein product; Similar to putative transport system permease protein YhfT of Escherichia coli.
 
     0.919
plu1998
Unnamed protein product; Similar to unknown protein YhfU of Escherichia coli.
 
     0.895
php
Phosphotriesterase homology protein.
 
     0.894
plu1996
Ala_racemase_N domain-containing protein; Unnamed protein product; Similar to unknown protein YhfX of Escherichia coli.
 
     0.872
plu1994
Unnamed protein product; Similar to unknown protein YhfZ of Escherichia coli.
 
     0.836
plu0524
Unnamed protein product; Similar to cystathionine beta-synthase.
  
 
 0.672
thrA
Aspartokinase I-homoserine dehydrogenase I; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
  
 0.594
metL
Bifunctional aspartokinase/homoserine dehydrogenase II (AKII-HDII) [Includes: Aspartokinase II; homoserine dehydrogenase II]; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
  
 0.594
gltB
Glutamate synthase [NADPH] large chain precursor (glutamate synthase alpha subunit) (NADPH-GOGAT) (GLTS alpha chain).
     
 0.560
metF
5,10-methylenetetrahydrofolate reductase; Truncated gene. Similar to the N-terminal region of transposase, IS630 family (ISPlu3-p); Belongs to the methylenetetrahydrofolate reductase family.
  
 
 0.560
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.