STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaZLipopolysaccharide core biosynthesis protein RfaZ. (302 aa)    
Predicted Functional Partners:
plu4430
Uncharacterized protein; Truncated gene. Highly similar to the central region of transposase.
  
     0.730
plu2958
Unnamed protein product; Similar to probable tail fiber assembly protein.
  
     0.712
plu2956
Unnamed protein product; Similar to tail fiber assembly protein.
  
     0.710
plu4369
Unnamed protein product; Similar to bacteriophage tail fiber assembly protein.
  
     0.709
plu3009
Unnamed protein product; Similar to phage tail fiber assembly protein.
  
     0.708
plu3023
Unnamed protein product; Similar to unknown protein YfdK of Escherichia coli.
  
     0.686
plu0032
Unnamed protein product; Highly similar to putative alternative tail fiber protein of bacteriophage.
  
     0.680
plu2021
Serine acetyltransferase; Unnamed protein product; Some similarities with serine O-acetyltransferase.
     
 0.671
plu3381
Unnamed protein product; Similar to phage tail assembly protein.
  
     0.664
plu3421
Unnamed protein product; Some similarities with lambda tail fiber assembly protein G.
  
     0.593
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.