Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2023Collar domain-containing protein; Unnamed protein product; Similar to putative tail fiber protein of a prophage. (493 aa)    
Predicted Functional Partners:
plu2024
Collar domain-containing protein; Unnamed protein product; Similar to tail fiber protein from lambdoid prophage.
 
   
0.673
plu3426
Unnamed protein product; Similar to tailspike and baseplate protein.
  
    0.470
plu3033
Unnamed protein product; Some similarities with unknown bacteriophage protein.
  
     0.462
uspA
Universal stress protein A; Required for resistance to DNA-damaging agents.
  
     0.452
plu3427
Unnamed protein product; Highly similar to hypothetical protein and some similarities with bacteriophage P2 protein D (gpD).
 
    0.445
mukB
Cell division protein; Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division; Belongs to the SMC family. MukB subfamily.
  
     0.444
tctE
Two-component sensor kinase.
  
     0.443
plu3431
Unnamed protein product; Highly similar to tail core protein.
 
    0.435
plu3424
Baseplate_J domain-containing protein; Unnamed protein product; Highly similar to phage-related baseplate assembly protein.
 
    0.431
plu3454
Unnamed protein product; Weakly similar to hypothetical proteins.
  
     0.429
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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