Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu2043Unnamed protein product; Similar to quinol oxidase subunit I. (445 aa)    
Predicted Functional Partners:
plu2042
Unnamed protein product; Similar to quinol oxidase subunit II.
 0.999
cydB
Cytochrome D ubiquinol oxidase subunit II (Cytochrome BD-I oxidase subunit II).
 0.996
cydA
Cytochrome D ubiquinol oxidase subunit I (Cytochrome BD-I oxidase subunit I); Truncated gene. Some similarities with unknown protein of Photorhabdus.
  
  
 
0.916
cydD
Transport ATP-binding protein CydD.
 
  
 0.803
cydC
Transport ATP-binding protein CydC.
 
  
 0.662
cyoD
Cytochrome O ubiquinol oxidase protein cyoD (ubiquinol oxidase chain D).
     
 0.582
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
     
 0.565
nuoH
NADH dehydrogenase I chain H (NADH-ubiquinone oxidoreductase chain H) (NUO8); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
     
 0.551
nuoN
NADH dehydrogenase I chain N (NADH-ubiquinone oxidoreductase chain N) (NUO14); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.
     
 0.550
nuoK
NADH dehydrogenase I chain K (NADH-ubiquinone oxidoreductase chain K) (NUO11); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family.
     
 0.549
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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