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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2045Unnamed protein product; Similar to unknown protein. (66 aa)    
Predicted Functional Partners:
plu2044
HTH gntR-type domain-containing protein; Unnamed protein product; Similar to unknown protein YdcR of Escherichia coli.
       0.686
plu2368
Unnamed protein product; Similar to unknown protein.
  
 
 0.652
vapC
Ribonuclease VapC; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
 
 0.652
plu2916
Prim_Zn_Ribbon domain-containing protein; Unnamed protein product; Some similarities with alpha replication protein of prophage.
  
     0.589
plu4430
Uncharacterized protein; Truncated gene. Highly similar to the central region of transposase.
  
     0.550
ISPlu15A
Transposase, ISNCY family.
  
     0.518
plu1643
Transposase_31 domain-containing protein; Unnamed protein product; Similar to putative transposase.
  
     0.492
plu4237
Transposase_31 domain-containing protein; C-terminal region of truncated transposase, IS630 family.
  
     0.491
plu3811
Transposase_31 domain-containing protein; Unnamed protein product; Similar to putative transposase.
  
     0.490
plu2042
Unnamed protein product; Similar to quinol oxidase subunit II.
       0.485
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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