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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2072Transglut_core2 domain-containing protein; Unnamed protein product; Similar to unknown protein YchA of Escherichia coli. (269 aa)    
Predicted Functional Partners:
rcsF
Exopolysaccharide synthesis regulatory protein RcsF; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.714
plu0844
Unnamed protein product; Similar to unknown protein YacC of Escherichia coli.
  
     0.672
plu0699
UPF0294 protein plu0699; Unnamed protein product; Similar to unknown protein YafD of Escherichia coli.
  
     0.659
plu4737
Unnamed protein product; Similar to unknown protein YijD of Escherichia coli.
  
     0.624
nlpB
Lipoprotein-34 precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.621
plu0288
Unnamed protein product; Similar to unknown protein YidR of Escherichia coli.
  
     0.561
plu3602
UPF0149 protein plu3602; Unnamed protein product; Similar to unknown protein YgfB of Escherichia coli; Belongs to the UPF0149 family.
  
     0.547
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase); Belongs to the KdsA family.
       0.542
plu1777
Unnamed protein product; Similar to probable membrane protein YccR of Escherichia coli.
  
     0.540
plu4106
Unnamed protein product; Similar to unknown protein YhhL of Escherichia coli.
  
     0.532
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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