Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu2074STAS domain-containing protein; Unnamed protein product; Similar to probable sulfate transport protein YchM of Escherichia coli. (566 aa)    
Predicted Functional Partners:
cynT
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
 
  
 0.852
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
 
 0.643
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.638
acpP
Acyl carrier protein (cytosolic activating factor) (CAF); Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.638
plu3093
Unnamed protein product; Highly similar to putative transport protein YfbS of Escherichia coli.
 
 
 0.599
plu4416
Unnamed protein product; Similar to protein-tyrosine phosphatase.
    
   0.574
plu0867
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
 0.564
sbcD
Nuclease sbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.531
plu3369
ANK_REP_REGION domain-containing protein; Unnamed protein product; Some similarities with phospholipase A accessory protein.
    
 
 0.432
plu3370
Unnamed protein product; Similar to phospholipase A.
    
 
 0.432
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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