Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2087Unnamed protein product; Similar to putative oxidoreductase component YcdY of Escherichia coli. (179 aa)    
Predicted Functional Partners:
plu1173
Unnamed protein product; Highly similar to unknown protein YggN of Escherichia coli.
  
     0.774
plu2693
UPF0181 protein plu2693; Unnamed protein product; Highly similar to unknown protein YoaH of Escherichia coli; Belongs to the UPF0181 family.
  
     0.774
plu2677
Unnamed protein product; Similar to probable membrane protein YniB of Escherichia coli.
  
     0.773
plu4106
Unnamed protein product; Similar to unknown protein YhhL of Escherichia coli.
  
     0.772
plu1386
Unnamed protein product; Similar to putative lipoprotein precursor YfeY protein of Escherichia coli.
  
     0.771
matP
Macrodomain Ter protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.770
plu2088
Unnamed protein product; Similar to putative lipoprotein YceB of Escherichia coli.
  
     0.770
plu0844
Unnamed protein product; Similar to unknown protein YacC of Escherichia coli.
  
     0.769
plu0306
Unnamed protein product; Similar to unknown protein YhjJ precursor of Escherichia coli.
  
     0.763
plu0289
Unnamed protein product; Similar to putative lipoprotein YidQ precursor of Escherichia coli.
  
     0.762
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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