STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdtHMultidrug resistance protein MdtH; Unnamed protein product; Highly similar to probable permease YceL of Escherichia coli. (401 aa)    
Predicted Functional Partners:
plu2088
Unnamed protein product; Similar to putative lipoprotein YceB of Escherichia coli.
       0.693
plu2865
Unnamed protein product; Similar to unknown protein yejG of Escherichia coli.
  
     0.568
rimJ
[ribosomal protein S5]-alanine N-acetyltransferase; Ribosomal-protein-alanine acetyltransferase (Acetylating enzyme for N-terminal of ribosomal protein S5).
       0.515
plu1882
Sugarporin_N domain-containing protein; Unnamed protein product; Similar to putative glycoporin. Putative secreted protein.
  
     0.487
plu4050
Uncharacterized protein; Truncated gene. Some similarities with the C-terminal region of Ner-like DNA-binding protein.
  
     0.464
plu3494
Unnamed protein product; Similar to bacteriophage protein.
  
     0.456
pbgE2
PbgE2 protein; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnE family.
  
     0.455
wzzE
Lipopolysaccharide biosynthesis protein WzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.436
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.