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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2097Unnamed protein product; Similar to unknown protein YecM of Escherichia coli. (187 aa)    
Predicted Functional Partners:
uspB
Universal stress protein B.
  
     0.757
smp
Protein Smp precursor.
  
     0.747
plu4737
Unnamed protein product; Similar to unknown protein YijD of Escherichia coli.
  
     0.744
plu1583
Unnamed protein product; Similar to putative sensory transduction regulator YbjN of Escherichia coli.
  
     0.736
lapA
Lipopolysaccharide assembly protein A; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.726
plu0305
GAPES3 domain-containing protein; Unnamed protein product; Similar to putative membrane protein YhjK of Escherichia coli.
  
     0.723
nlpB
Lipoprotein-34 precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.717
wzzE
Lipopolysaccharide biosynthesis protein WzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.708
plu4557
Unnamed protein product; Highly similar to unknown protein YtfK of Escherichia coli.
  
     0.699
plu2488
UPF0263 protein plu2488; Unnamed protein product; Highly similar to unknown protein YciU of Escherichia coli; Belongs to the UPF0263 family.
  
     0.698
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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