Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2098HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative DNA-binding protein. (104 aa)    
Predicted Functional Partners:
plu2099
Unnamed protein product; Similar to unknown protein.
 
 
   0.943
plu2537
Unnamed protein product; Similar to unknown protein.
 
 
   0.749
plu3981
Unnamed protein product; Similar to unknown protein.
 
 
   0.746
plu2536
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative bacterial regulatory protein, merR family.
  
     0.683
plu1402
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative transcriptional regulator.
  
     0.662
plu2130
Unnamed protein product; Similar to unknown protein.
 
    0.660
plu4467
Unnamed protein product; Similar to unknown protein.
 
    0.653
plu4367
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to putative transcriptional regulator.
  
     0.644
plu0929
PINc domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.525
plu0807
Unnamed protein product; Weakly similar to hypothetical protein.
  
     0.424
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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