STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2133Unnamed protein product; Similar to hypothetical lipoprotein YeaY precursor of Escherichia coli. (192 aa)    
Predicted Functional Partners:
plu2132
Peptidase_M22 domain-containing protein; Unnamed protein product; Highly similar to hypothetical protease YeaZ of Escherichia coli.
  
  
 0.712
tus
DNA replication terminus site-binding protein (Ter protein) (Ter binding protein).
  
     0.709
secG
Protein-export membrane protein SecG (Preprotein translocase band 1 subunit) (P12); Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
      
 0.648
plu3163
Unnamed protein product; Unknown protein.
      
 0.623
plu2232
UPF0482 protein plu2232; Unnamed protein product; Similar to unknown protein YnfB precursor of Escherichia coli; Belongs to the UPF0482 family.
  
   
 0.609
plu2686
Unnamed protein product; Similar to unknown protein YebY precursor of Escherichia coli.
  
     0.602
plu1818
Unnamed protein product; Similar to unknown protein YceP of Escherichia coli.
  
     0.591
plu3275
SseB_C domain-containing protein; Unnamed protein product; Some similarities with rhodanese-like protein SseB of Escherichia coli.
  
     0.587
plu4132
Unnamed protein product; Similar to putative lipoprotein YjeI precursor of Escherichia coli.
  
     0.579
flgM
Negative regulator of flagellin synthesis (Anti-sigma-28 factor) FlgM.
  
     0.564
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.