STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2140FAA_hydrolase domain-containing protein; Unnamed protein product; Similar to putative isomerase YcgM of Escherichia coli. (218 aa)    
Predicted Functional Partners:
plu2141
UPF0260 protein plu2141; Unnamed protein product; Similar to unknown protein YcgN of Escherichia coli; Belongs to the UPF0260 family.
       0.837
plu2139
Unnamed protein product; Similar to unknown protein YcgL of Escherichia coli.
  
    0.544
cynS
Cyanate lyase (cyanate hydrolase) (cyanase); Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
 
      0.414
plu1323
Cupin_2 domain-containing protein; Unnamed protein product; Weakly similar to gentisate 1,2-dioxygenase.
     
 0.410
plu2142
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with hypothetical phage protein.
       0.406
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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