Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ureCUrease alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. (571 aa)    
Predicted Functional Partners:
ureA
Urease gamma subunit; Belongs to the urease gamma subunit family.
 0.999
ureB
Urease beta subunit; Belongs to the urease beta subunit family.
 0.999
ureF
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.984
ureD
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.973
ureG
Urease accessory protein; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
  
 0.956
ureE
Urease accessory protein.
 
  
 0.902
plu4566
Unnamed protein product; Some similarities with unknown protein.
     
  0.900
gltB
Glutamate synthase [NADPH] large chain precursor (glutamate synthase alpha subunit) (NADPH-GOGAT) (GLTS alpha chain).
      
 0.527
plu2850
Unnamed protein product; Similar to outer membrane protein precursor.
      
 0.490
livF
High-affinity branched-chain amino acid transport ATP-binding protein LivF; Belongs to the ABC transporter superfamily.
     
 0.444
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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