Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2193TauD domain-containing protein; Unnamed protein product; Weakly similar to hypothetical gamma-butyrobetaine,2-oxoglutarate. (335 aa)    
Predicted Functional Partners:
plu2194
N-acetyltransferase domain-containing protein; Unnamed protein product; Similar to acetyltransferase.
       0.639
plu2195
PGA_cap domain-containing protein; Unnamed protein product; Hypothetical gene.
       0.582
plu0117
MFS domain-containing protein; Unnamed protein product; Similar to multidrug resistance protein.
  
    0.521
cpmC
CpmC protein involved in carbapenem biosynthesis.
  
     0.500
plu1004
TauD domain-containing protein; Unnamed protein product; Similar to alpha-ketoglutarate-dependent taurine dioxygenase (2-aminoethanesulfonate dioxygenase).
  
     0.497
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
  
 0.478
plu1743
FAD_binding_3 domain-containing protein; Unnamed protein product; Similar to putative monooxygenase.
  
     0.471
plu2236
FAD_binding_3 domain-containing protein; Unnamed protein product; Some similarities with probable monooxygenase.
  
     0.470
plu1762
Unnamed protein product; Similar to probable glycosyltransferase.
 
     0.467
plu1760
Unnamed protein product; Similar to probable glycosyltransferase.
 
     0.463
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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