Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2222Unnamed protein product; Similar to the nematicidal protein 2. Probable membrane protein. (1625 aa)    
Predicted Functional Partners:
tcdA4
Insecticidal toxin complex protein TcdA4.
 
 
 0.683
tccB3
Insecticidal toxin complex protein TccB3.
 
   0.605
plu4180
Unnamed protein product; Some similarities with fatty-acyl-CoA reductase.
  
     0.588
tccB2
Insecticidal toxin complex protein TccB2.
 
   0.586
tccB1
Highly similar to insecticidal toxin complex protein TccB of W14 Putative transmembrane protein.
 
   0.585
tccC7
Insecticidal toxin complex protein TccC7.
  
     0.583
tccC3
Insecticidal toxin complex protein TccC3.
  
     0.578
tccC5
Insecticidal toxin complex protein TccC5.
  
   
 0.572
tccC2
Insecticidal toxin complex protein TccC2.
  
     0.567
tccC1
Insecticidal toxin complex protein TccC1; Truncated gene. Highly similar to the C-terminal region of insecticidal toxin complex protein TccZ, disruption of the gene tccZ in TT01 genome compared to W14.
  
     0.566
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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