Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu2225HTH lysR-type domain-containing protein; Unnamed protein product; Highly similar to probable transcription regulator LysR-type, YnfL of Escherichia coli; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
plu0410
HTH lysR-type domain-containing protein; Unnamed protein product; Weakly similar to putative LysR-family trancsriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.762
plu3936
HTH lysR-type domain-containing protein; Unnamed protein product; Similar to LysR-family transcription regulators; Belongs to the LysR transcriptional regulatory family.
  
     0.728
lysR
Transcriptional activator protein LysR; Belongs to the LysR transcriptional regulatory family.
  
   
 0.703
dsdC
D-serine dehydratase (deaminase) transcriptional activator DsdC; Belongs to the LysR transcriptional regulatory family.
  
     0.601
plu1189
HTH lysR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.573
plu2224
MFS domain-containing protein; Unnamed protein product; Similar to hypothetical transport protein YnfM of Escherichia coli (probable bicyclomycin resistance protein (sulfonamide resistance)).
       0.551
plu4260
HTH lysR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.511
mlc
Making large colonies protein.
       0.509
tciR1
TciR1 protein; Similar to LysR-type transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.420
nhaR
Transcriptional activator of nhaA; Belongs to the LysR transcriptional regulatory family.
  
     0.417
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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