Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2235Unnamed protein product; Similar to exochitinase. (567 aa)    
Predicted Functional Partners:
plu2352
Chitin-binding type-4 domain-containing protein; Unnamed protein product; Similar to chitinase and chitin binding protein precursor.
 
   
 0.725
dctA
C4-dicarboxylate transport protein; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
      
 0.532
plu3448
Unnamed protein product; Similar to unknown protein.
  
     0.520
tccA2
Insecticidal toxin complex protein TccA2.
    
 
 0.505
plu3428
Unnamed protein product; Similar to unknown protein.
  
     0.505
tccA1
Highly similar to insecticidal toxin complex protein TccA of W14.
    
 
 0.505
tccA3
Insecticidal toxin complex protein TccA3.
    
 
 0.451
plu3461
Mor domain-containing protein; Unnamed protein product; Similar to DNA-binding protein RdgB which regulates pectin lyase in response to DNA damage.
  
     0.443
plu1882
Sugarporin_N domain-containing protein; Unnamed protein product; Similar to putative glycoporin. Putative secreted protein.
  
     0.435
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
 
 0.430
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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