Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
plu2240Pyr_redox_2 domain-containing protein; Unnamed protein product; Similar to probable oxidoreductase. Putative transmembrane protein. (430 aa)    
Predicted Functional Partners:
plu2241
Unnamed protein product; Similar to sarcosine oxidase and hydrogen cyanide synthase.
 
  
 0.994
plu2242
DAO domain-containing protein; Unnamed protein product; Highly similar to probable D-amino acid oxidase.
 
  
  0.994
plu2243
Unnamed protein product; Similar to unknown protein; Belongs to the proline racemase family.
 
  
  0.991
plu2245
Unnamed protein product; Similar to probable dihydrodipicolinate synthetase; Belongs to the DapA family.
 
  
 0.959
plu2244
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Highly similar to probable transcription regulator.
 
     0.727
ahpC
Alkyl hydroperoxide reductase, small subunit (antioxidant).
  
 
 0.694
plu2246
Aldedh domain-containing protein; Unnamed protein product; Highly similar to probable aldehyde dehydrogenase and similar to ketoglutarate semialdehyde dehydrogenase.
 
    0.561
plu3514
TPR_REGION domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
  
 
 0.510
plu3820
Unnamed protein product; Similar to putative thioredoxin-like protein YbbN of Escherichia coli.
  
 
 0.510
trxA
Thioredoxin 1 (TRX1) (TRX); Belongs to the thioredoxin family.
  
 
 0.510
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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