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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2242DAO domain-containing protein; Unnamed protein product; Highly similar to probable D-amino acid oxidase. (375 aa)    
Predicted Functional Partners:
plu2240
Pyr_redox_2 domain-containing protein; Unnamed protein product; Similar to probable oxidoreductase. Putative transmembrane protein.
 
  
 0.994
plu2243
Unnamed protein product; Similar to unknown protein; Belongs to the proline racemase family.
 
  
 0.994
plu2241
Unnamed protein product; Similar to sarcosine oxidase and hydrogen cyanide synthase.
 
  
 0.993
plu2245
Unnamed protein product; Similar to probable dihydrodipicolinate synthetase; Belongs to the DapA family.
 
  
 0.969
plu2246
Aldedh domain-containing protein; Unnamed protein product; Highly similar to probable aldehyde dehydrogenase and similar to ketoglutarate semialdehyde dehydrogenase.
 
    0.669
plu2244
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Highly similar to probable transcription regulator.
 
     0.659
dadX
Alanine racemase, catabolic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.593
alr
Alanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.593
hcaD
3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component; Part of the multicomponent 3-phenylpropionate dioxygenase, that converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid- dihydrodiol (CI-dihydrodiol), respectively.
   
 
 0.544
plu4232
Unnamed protein product; Similar to monooxygenase.
   
  
 0.522
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.