Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2243Unnamed protein product; Similar to unknown protein; Belongs to the proline racemase family. (320 aa)    
Predicted Functional Partners:
plu2242
DAO domain-containing protein; Unnamed protein product; Highly similar to probable D-amino acid oxidase.
 
  
 0.994
plu2241
Unnamed protein product; Similar to sarcosine oxidase and hydrogen cyanide synthase.
 
  
  0.992
plu2240
Pyr_redox_2 domain-containing protein; Unnamed protein product; Similar to probable oxidoreductase. Putative transmembrane protein.
 
  
  0.991
plu2246
Aldedh domain-containing protein; Unnamed protein product; Highly similar to probable aldehyde dehydrogenase and similar to ketoglutarate semialdehyde dehydrogenase.
 
 
 
 0.835
plu2245
Unnamed protein product; Similar to probable dihydrodipicolinate synthetase; Belongs to the DapA family.
 
   
 0.833
proC
Pyrroline-5-carboxylate reductase (P5CR) (P5C reductase); Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.831
plu2244
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Highly similar to probable transcription regulator.
 
     0.779
plu3045
Unnamed protein product; Similar to ornithine cyclodeaminase.
 
   
 0.679
plu2239
Unnamed protein product; Similar to unknown protein. Putative transmembrane protein.
       0.498
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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