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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2245Unnamed protein product; Similar to probable dihydrodipicolinate synthetase; Belongs to the DapA family. (306 aa)    
Predicted Functional Partners:
plu2242
DAO domain-containing protein; Unnamed protein product; Highly similar to probable D-amino acid oxidase.
 
  
 0.969
plu2240
Pyr_redox_2 domain-containing protein; Unnamed protein product; Similar to probable oxidoreductase. Putative transmembrane protein.
 
  
  0.957
plu2241
Unnamed protein product; Similar to sarcosine oxidase and hydrogen cyanide synthase.
 
  
  0.952
plu2246
Aldedh domain-containing protein; Unnamed protein product; Highly similar to probable aldehyde dehydrogenase and similar to ketoglutarate semialdehyde dehydrogenase.
 
  
 0.885
plu2243
Unnamed protein product; Similar to unknown protein; Belongs to the proline racemase family.
 
  
 0.815
dapB
Dihydrodipicolinate reductase (DHPR); Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
  
 0.695
hpaX
4-hydroxyphenylacetate permease.
 
  
 0.638
thrA
Aspartokinase I-homoserine dehydrogenase I; In the C-terminal section; belongs to the homoserine dehydrogenase family.
 
  
 0.627
plu2247
Unnamed protein product; Highly similar to amino acid transporter. Putative transmembrane protein.
     
 0.572
metL
Bifunctional aspartokinase/homoserine dehydrogenase II (AKII-HDII) [Includes: Aspartokinase II; homoserine dehydrogenase II]; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
  
 0.570
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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