Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2250Unnamed protein product; Highly similar to unknown protein. (80 aa)    
Predicted Functional Partners:
plu2251
Toxin; Unnamed protein product; Similar to unknown protein; Belongs to the RelE toxin family.
 
   0.959
plu4785
Toxin; Unnamed protein product; Similar to unknown protein; Belongs to the RelE toxin family.
 
   0.789
nadR
Transcriptional regulator NadR.
   
    0.721
plu4282
Unnamed protein product; Similar to unknown protein.
 
   0.710
plu0251
Unnamed protein product; Some similarities with unknown protein.
 
   0.661
plu2252
HicB-like domain-containing protein; Unnamed protein product; Similar to unknown protein from bacteriophage.
       0.533
plu2249
Unnamed protein product; Some similarities with unknown protein. Putative secreted protein.
  
    0.530
plu0284
Unnamed protein product; Similar to unknown protein YacB of Plasmid ColIb-P9.
 
   0.457
plu2210
Unnamed protein product; Weakly similar to unknown protein.
 
   0.456
plu2306
Unnamed protein product; Similar to unknown protein.
 
   0.434
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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