Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xylAXylose isomerase (D-xylulose keto-isomerase). (439 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase.
 
 
 0.979
fruA
PTS system, fructose-specific IIBC component.
     
 0.950
plu0474
PKS_ER domain-containing protein; Unnamed protein product; Some similarities with different types of deshydrogenases.
     
 0.905
plu1960
PKS_ER domain-containing protein; Unnamed protein product; Similar to xylitol (sorbitol) dehydrogenase.
     
 0.905
xylR
Xylose operon regulatory protein.
 
   
 0.870
plu3935
Unnamed protein product; Highly similar to unknown protein of Photorhabdus luminescens and some similarities with the central region of beta-xylosidase.
 
  
  0.844
plu3934
Unnamed protein product; Highly similar to unknown protein of Photorhabdus luminescens and some similarities with the central region of beta-xylosidase.
 
  
  0.843
glk
Glucokinase (Glucose kinase); tRNAscan-SE vs 1.3 result - Cove score = 43.71; Belongs to the bacterial glucokinase family.
     
 0.812
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
  
 0.600
lsrK
Autoinducer-2 kinase; Catalyzes the phosphorylation of autoinducer-2 (AI-2) to phospho-AI-2, which subsequently inactivates the transcriptional regulator LsrR and leads to the transcription of the lsr operon. Phosphorylates the ring-open form of (S)-4,5-dihydroxypentane-2,3-dione (DPD), which is the precursor to all AI-2 signaling molecules, at the C5 position.
 
  
 0.514
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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