Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| fruA | lsrK | plu1993 | plu3141 | PTS system, fructose-specific IIBC component. | Autoinducer-2 kinase; Catalyzes the phosphorylation of autoinducer-2 (AI-2) to phospho-AI-2, which subsequently inactivates the transcriptional regulator LsrR and leads to the transcription of the lsr operon. Phosphorylates the ring-open form of (S)-4,5-dihydroxypentane-2,3-dione (DPD), which is the precursor to all AI-2 signaling molecules, at the C5 position. | 0.437 |
| fruA | plu0474 | plu1993 | plu0474 | PTS system, fructose-specific IIBC component. | PKS_ER domain-containing protein; Unnamed protein product; Some similarities with different types of deshydrogenases. | 0.902 |
| fruA | xylA | plu1993 | plu2275 | PTS system, fructose-specific IIBC component. | Xylose isomerase (D-xylulose keto-isomerase). | 0.932 |
| fruA | xylB | plu1993 | plu1959 | PTS system, fructose-specific IIBC component. | Xylulose kinase. | 0.437 |
| fruA | xylR | plu1993 | plu2274 | PTS system, fructose-specific IIBC component. | Xylose operon regulatory protein. | 0.501 |
| galM | glk | plu0577 | plu1405 | Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. | Glucokinase (Glucose kinase); tRNAscan-SE vs 1.3 result - Cove score = 43.71; Belongs to the bacterial glucokinase family. | 0.911 |
| galM | xylA | plu0577 | plu2275 | Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. | Xylose isomerase (D-xylulose keto-isomerase). | 0.596 |
| glk | galM | plu1405 | plu0577 | Glucokinase (Glucose kinase); tRNAscan-SE vs 1.3 result - Cove score = 43.71; Belongs to the bacterial glucokinase family. | Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. | 0.911 |
| glk | xylA | plu1405 | plu2275 | Glucokinase (Glucose kinase); tRNAscan-SE vs 1.3 result - Cove score = 43.71; Belongs to the bacterial glucokinase family. | Xylose isomerase (D-xylulose keto-isomerase). | 0.812 |
| lsrK | fruA | plu3141 | plu1993 | Autoinducer-2 kinase; Catalyzes the phosphorylation of autoinducer-2 (AI-2) to phospho-AI-2, which subsequently inactivates the transcriptional regulator LsrR and leads to the transcription of the lsr operon. Phosphorylates the ring-open form of (S)-4,5-dihydroxypentane-2,3-dione (DPD), which is the precursor to all AI-2 signaling molecules, at the C5 position. | PTS system, fructose-specific IIBC component. | 0.437 |
| lsrK | xylA | plu3141 | plu2275 | Autoinducer-2 kinase; Catalyzes the phosphorylation of autoinducer-2 (AI-2) to phospho-AI-2, which subsequently inactivates the transcriptional regulator LsrR and leads to the transcription of the lsr operon. Phosphorylates the ring-open form of (S)-4,5-dihydroxypentane-2,3-dione (DPD), which is the precursor to all AI-2 signaling molecules, at the C5 position. | Xylose isomerase (D-xylulose keto-isomerase). | 0.438 |
| lsrK | xylR | plu3141 | plu2274 | Autoinducer-2 kinase; Catalyzes the phosphorylation of autoinducer-2 (AI-2) to phospho-AI-2, which subsequently inactivates the transcriptional regulator LsrR and leads to the transcription of the lsr operon. Phosphorylates the ring-open form of (S)-4,5-dihydroxypentane-2,3-dione (DPD), which is the precursor to all AI-2 signaling molecules, at the C5 position. | Xylose operon regulatory protein. | 0.498 |
| plu0474 | fruA | plu0474 | plu1993 | PKS_ER domain-containing protein; Unnamed protein product; Some similarities with different types of deshydrogenases. | PTS system, fructose-specific IIBC component. | 0.902 |
| plu0474 | xylA | plu0474 | plu2275 | PKS_ER domain-containing protein; Unnamed protein product; Some similarities with different types of deshydrogenases. | Xylose isomerase (D-xylulose keto-isomerase). | 0.910 |
| plu1960 | xylA | plu1960 | plu2275 | PKS_ER domain-containing protein; Unnamed protein product; Similar to xylitol (sorbitol) dehydrogenase. | Xylose isomerase (D-xylulose keto-isomerase). | 0.910 |
| plu1960 | xylB | plu1960 | plu1959 | PKS_ER domain-containing protein; Unnamed protein product; Similar to xylitol (sorbitol) dehydrogenase. | Xylulose kinase. | 0.983 |
| uxuA | xylA | plu0170 | plu2275 | Mannonate dehydratase (D-mannonate hydrolase); Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family. | Xylose isomerase (D-xylulose keto-isomerase). | 0.430 |
| xylA | fruA | plu2275 | plu1993 | Xylose isomerase (D-xylulose keto-isomerase). | PTS system, fructose-specific IIBC component. | 0.932 |
| xylA | galM | plu2275 | plu0577 | Xylose isomerase (D-xylulose keto-isomerase). | Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. | 0.596 |
| xylA | glk | plu2275 | plu1405 | Xylose isomerase (D-xylulose keto-isomerase). | Glucokinase (Glucose kinase); tRNAscan-SE vs 1.3 result - Cove score = 43.71; Belongs to the bacterial glucokinase family. | 0.812 |
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