STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2293Unnamed protein product; Similar to unknown protein. (100 aa)    
Predicted Functional Partners:
plu2292
ImpA_N domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
    0.870
plu2295
Unnamed protein product; Similar to VrgG protein.
 
     0.859
plu2290
Unnamed protein product; Similar to unknown protein.
 
    0.845
plu2289
DotU domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
  
  
 0.821
plu2291
Unnamed protein product; Hypothetical gene.
  
    0.818
plu2288
ImcF-related_N domain-containing protein; Unnamed protein product; Some similarities with unknown protein and putative macrophage toxin.
 
     0.808
plu2297
Unnamed protein product; Similar to unknown protein.
 
    0.786
plu2294
Unnamed protein product; Hypothetical gene.
       0.779
plu2287
Unnamed protein product; Similar to ClpA/B-type chaperone; Belongs to the ClpA/ClpB family.
 
     0.775
plu2397
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with unknown protein.
 
     0.763
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.