Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2317Unnamed protein product; Similar to putative transmembrane protein and signal transducers like Irp8. Putative transmembrane protein. (414 aa)    
Predicted Functional Partners:
plu2316
Unnamed protein product; Similar to the pesticin receptor precursor FuyA (IRPC).
 
     0.842
plu2318
Unnamed protein product; Similar to the lipoprotein inner membrane ABC-transporter Irp6 of Yersinia enterocolitica.
  
    0.582
plu2320
Unnamed protein product; Similar to HMWP2 protein of Yersinia enterocolitica.
 
    0.578
plu2319
Unnamed protein product; Similar to the lipoprotein inner membrane ABC-transporter Irp6 of Yersinia enterocolitica.
  
    0.577
entE
2,3-dihydroxybenzoate--[carrier protein] ligase (enterobactin synthetase component E).
 
    0.433
nagZ
Beta-hexosaminidase (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase); Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
 
   
 0.431
plu2322
GFO_IDH_MocA domain-containing protein; Unnamed protein product; Similar to Irp3 protein of Yersinia enterocolitica.
 
    0.428
plu2315
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Some similarities in the C-terminal part with transcription regulators.
       0.417
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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