Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2324Unnamed protein product; N-terminal region highly similar Irp5 protein and C-terminal region similar to Irp9 protein of Yersinia enterocolitica. (977 aa)    
Predicted Functional Partners:
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
 
0.998
plu2320
Unnamed protein product; Similar to HMWP2 protein of Yersinia enterocolitica.
 
 
0.993
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
 
 
0.987
entB
Isochorismatase (2,3-dihydro-2,3-dihydroxybenzoate synthetase).
 
 
 0.987
trpC
Tryptophan biosynthesis protein TrpCF [includes: indole-3-glycerol phosphate synthase (IGPS); N-(5'-phospho-ribosyl)anthrnilate isomerase (PRAI)].
  
 
 0.979
plu2642
Carrier domain-containing protein; Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
  
0.975
plu3923
Condensation domain-containing protein; Unnamed protein product; Weakly similar to synthetases (pyoverdine synthetase B, actinomycin synthetase II AcmB, mycosubtilin synthetase chain MycB...).
 
  
 0.975
plu2737
Carrier domain-containing protein; Unnamed protein product; Some similarities with isochorismatase.
 
 
 0.974
plu2670
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis (tyrocidin, gramicidin, surfactin, pyoverdine). Putative transmembrane protein.
 
  
0.950
plu2186
Carrier domain-containing protein; Unnamed protein product; Similar to non-ribosomal peptide synthetase.
 
  
0.945
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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