STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2340Unnamed protein product; Highly similar to tyrosine-specific transport system TyrP of Escherichia coli. (402 aa)    
Predicted Functional Partners:
plu2341
Unnamed protein product; Some similarities with decarboxylase.
    
 0.734
menC
O-succinylbenzoate-CoA synthase (OSB synthase) (4-(2'-carboxyphenyl)-4-oxybutyric acid synthase); Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.666
plu2339
Uncharacterized protein.
   
  0.557
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region.
  
   
 0.554
plu1385
BOF domain-containing protein; Unnamed protein product; Similar to putative exported protein YgiW of Escherichia coli.
  
     0.552
plu2097
Unnamed protein product; Similar to unknown protein YecM of Escherichia coli.
  
     0.498
frdC
Fumarate reductase 15 kDa hydrophobic protein; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.
  
     0.461
plu3616
UPF0231 protein plu3616; Unnamed protein product; Similar to unknown protein YacL of Escherichia coli; Belongs to the UPF0231 family.
  
     0.450
sdaC
Serine transporter SdaC protein.
  
     0.449
uhpC
Regulatory protein UhpC.
  
     0.445
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.