Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2345DAO domain-containing protein; Unnamed protein product; Some similarities with probable oxidoreductase. Hypothetical transmembrane secreted protein. (513 aa)    
Predicted Functional Partners:
plu4287
DAO domain-containing protein; Unnamed protein product; Highly similar to probable oxidoreductase.
  
  
 
0.928
goaG
4-aminobutyrate aminotransferase (gamma-amino-N-butyrate transaminase) (GABA transaminase); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.744
plu2346
Unnamed protein product; Similar to putative cytochrome, YhaH protein of Escherichia coli.
       0.631
plu2260
Unnamed protein product; Similar to beta-alanine--pyruvate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.589
speB
Agmatinase (agmatine ureohydrolase) (AUH); Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily.
 
  
 0.507
plu2344
Unnamed protein product; Similar to glucose 1-dehydrogenase and to unknown protein.
    
  0.495
plu2349
Aldedh domain-containing protein; Unnamed protein product; Similar to putative betaine-aldehyde dehydrogenase precursor YdcW of Escherichia coli.
 
    0.454
plu4143
Unnamed protein product; Some similarities with agmatinase SpeB (Agmatine ureohydrolase) (AUH); Belongs to the arginase family.
 
  
 0.430
gltB
Glutamate synthase [NADPH] large chain precursor (glutamate synthase alpha subunit) (NADPH-GOGAT) (GLTS alpha chain).
  
  
 0.407
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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