Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
plu2352Chitin-binding type-4 domain-containing protein; Unnamed protein product; Similar to chitinase and chitin binding protein precursor. (199 aa)    
Predicted Functional Partners:
plu2458
Glyco_18 domain-containing protein; Unnamed protein product; Similar to exochitinase.
 
   
 0.798
plu2461
Glyco_18 domain-containing protein; Unnamed protein product; Similar to exochitinase.
 
   
 0.784
plu2235
Unnamed protein product; Similar to exochitinase.
 
   
 0.725
plu3001
Uncharacterized protein; Truncated gene. Some similarities with unknown protein YnfI precursor of Escherichia coli.
  
  
 0.684
plu4187
Unnamed protein product; Some similarities with cyclase/dehydrase/aromatase.
  
     0.560
plu3528
TauD domain-containing protein; Unnamed protein product; Some similarities with putative oxygenase and clavaminate synthase 1.
  
     0.553
plu1382
Neutral metalloproteinase; Extracellular zinc metalloprotease.
   
  
 0.543
dctA
C4-dicarboxylate transport protein; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
      
 0.532
plu2351
NAD(P)-bd_dom domain-containing protein; Unnamed protein product; Similar to unknown protein.
       0.512
plu0795
Unnamed protein product; Similar to phosphoglycolate phosphatase.
  
     0.507
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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