Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2365Unnamed protein product; Highly similar to plasmid stable inheritance protein K. (129 aa)    
Predicted Functional Partners:
plu2366
SpoVT-AbrB domain-containing protein; Unnamed protein product; Highly similar to plasmid stable inheritance protein I.
 
 
 0.995
plu0928
SpoVT-AbrB domain-containing protein; Unnamed protein product; Similar to cell growth regulatory protein of Xanthomonas axonopodis.
  
 
 0.756
plu1326
Unnamed protein product; Similar to unknown protein YafQ of Escherichia coli.
 
   
 0.669
dinJ
DNA-damage-inducible protein J.
 
   
 0.636
plu2364
Unnamed protein product; Highly similar to N-terminal region of MucA protein.
       0.565
plu3944
Unnamed protein product; Similar to unknown protein YhaV of Escherichia coli.
  
   
 0.489
plu3894
Uncharacterized protein; Truncated gene. Some similarities with unknown protein.
 
   
 0.479
hicB1
Antitoxin HicB 1; Antitoxin component of a type II toxin-antitoxin (TA) system. Functions as an mRNA interferase antitoxin preventing effects of the HicA 1 toxin (By similarity).
  
   
 0.434
plu2189
HTH cro/C1-type domain-containing protein; Truncated gene. Some similarities with probable kfr protein of Escherichia coli.
  
  
 0.412
sohA
Suppressor protein SohA.
 
   
 0.412
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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