STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2368Unnamed protein product; Similar to unknown protein. (125 aa)    
Predicted Functional Partners:
plu2369
Unnamed protein product; Similar to unknown protein.
 
   0.955
plu0901
Unnamed protein product; Similar to virulence plasmid protein.
 
 
 0.712
plu3058
Arc domain-containing protein; Unnamed protein product; Similar to plasmid stabilization protein.
 
 
 
 0.708
plu2045
Unnamed protein product; Similar to unknown protein.
  
 
 0.652
plu2270
Unnamed protein product; Some similarities with unknown protein.
 
 
   0.598
plu2367
Unnamed protein product; Hypothetical gene.
       0.590
plu2330
Unnamed protein product; Highly similar to the plasmid stabilization ParD protein.
  
     0.583
plu0193
Unnamed protein product; Similar to unknown protein YiiF of Escherichia coli.
   
   0.576
vapC
Ribonuclease VapC; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.519
plu3959
RHH_1 domain-containing protein; Unnamed protein product; Weakly similar to unknown protein.
 
 
   0.512
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.