Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2369Unnamed protein product; Similar to unknown protein. (67 aa)    
Predicted Functional Partners:
plu2368
Unnamed protein product; Similar to unknown protein.
 
   0.970
vapC
Ribonuclease VapC; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   0.703
plu2330
Unnamed protein product; Highly similar to the plasmid stabilization ParD protein.
  
     0.559
plu2367
Unnamed protein product; Hypothetical gene.
       0.541
plu3960
Unnamed protein product; Similar to unknown protein.
 
     0.532
plu3959
RHH_1 domain-containing protein; Unnamed protein product; Weakly similar to unknown protein.
  
     0.528
plu2270
Unnamed protein product; Some similarities with unknown protein.
  
     0.502
plu2306
Unnamed protein product; Similar to unknown protein.
 
     0.494
plu2305
RHH_1 domain-containing protein; Truncated gene. Some similarities with plasmid stability-like protein.
  
     0.493
plu3058
Arc domain-containing protein; Unnamed protein product; Similar to plasmid stabilization protein.
  
     0.480
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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