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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2375Unnamed protein product; Similar to hypothetical oxidoreductase YdgJ of Escherichia coli. (345 aa)    
Predicted Functional Partners:
plu1800
AP_endonuc_2 domain-containing protein; Unnamed protein product; Similar to myo-inositol catabolism IolE of Bacillus subtilis and to rhizopine catabolism protein.
 
 
 0.953
plu1804
Unnamed protein product; Similar to myo-inositol dehydrogenase.
  
 
 
0.911
plu1805
Unnamed protein product; Similar to myo-inositol catabolism IolD of Bacillus subtilis; Belongs to the TPP enzyme family.
  
  
 0.627
plu1799
Unnamed protein product; Similar to myo-inositol catabolism iolB of Bacillus subtilis.
  
  
 0.609
cobB
CobB protein; Belongs to the sirtuin family. Class III subfamily.
    
   0.552
lysS
Lysyl-tRNA synthetase (Lysine--tRNA ligase); Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.546
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.518
plu2376
Unnamed protein product; Similar to probable membrane protein YdgK of Escherichia coli.
       0.511
rffG
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.487
plu1801
Unnamed protein product; Similar to myo-inositol catabolism protein IolC of Bacillus subtilis.
  
  
 0.483
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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