Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
bvgS | plu2376 | plu2284 | plu2376 | Virulence sensor protein BvgS precursor. | Unnamed protein product; Similar to probable membrane protein YdgK of Escherichia coli. | 0.414 |
plu2375 | plu2376 | plu2375 | plu2376 | Unnamed protein product; Similar to hypothetical oxidoreductase YdgJ of Escherichia coli. | Unnamed protein product; Similar to probable membrane protein YdgK of Escherichia coli. | 0.511 |
plu2376 | bvgS | plu2376 | plu2284 | Unnamed protein product; Similar to probable membrane protein YdgK of Escherichia coli. | Virulence sensor protein BvgS precursor. | 0.414 |
plu2376 | plu2375 | plu2376 | plu2375 | Unnamed protein product; Similar to probable membrane protein YdgK of Escherichia coli. | Unnamed protein product; Similar to hypothetical oxidoreductase YdgJ of Escherichia coli. | 0.511 |
plu2376 | rnfA | plu2376 | plu2377 | Unnamed protein product; Similar to probable membrane protein YdgK of Escherichia coli. | Electron transport complex protein RnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.714 |
plu2376 | rnfB | plu2376 | plu2378 | Unnamed protein product; Similar to probable membrane protein YdgK of Escherichia coli. | Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.671 |
rnfA | plu2376 | plu2377 | plu2376 | Electron transport complex protein RnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | Unnamed protein product; Similar to probable membrane protein YdgK of Escherichia coli. | 0.714 |
rnfA | rnfB | plu2377 | plu2378 | Electron transport complex protein RnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.992 |
rnfB | plu2376 | plu2378 | plu2376 | Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Unnamed protein product; Similar to probable membrane protein YdgK of Escherichia coli. | 0.671 |
rnfB | rnfA | plu2378 | plu2377 | Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Electron transport complex protein RnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.992 |