Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2400MLD domain-containing protein; Unnamed protein product; Some similarities with C-terminal region of dermonecrotic toxin. (568 aa)    
Predicted Functional Partners:
plu4122
Unnamed protein product; Hypothetical gene.
      
 0.584
tccC1
Insecticidal toxin complex protein TccC1; Truncated gene. Highly similar to the C-terminal region of insecticidal toxin complex protein TccZ, disruption of the gene tccZ in TT01 genome compared to W14.
      
 0.537
tcdA1
Highly similar to insecticidal toxin complex protein TcdA (toxin A).
      
 0.532
tccC7
Insecticidal toxin complex protein TccC7.
      
 0.531
plu2399
Unnamed protein product; Highly similar to unknown protein of Photorhabdus.
       0.445
plu2401
Peptidase_C58 domain-containing protein; Unnamed protein product; Similar to Yop targeted effector YopT.
       0.417
plu2397
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with unknown protein.
       0.414
plu2398
AAA domain-containing protein; Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with C-terminal region of AAA family ATPase.
       0.414
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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