Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu2404Unnamed protein product; Some similarities with aspartate aminotransferase and perosamine synthetase. Two candidate membrane-spanning segments; Belongs to the DegT/DnrJ/EryC1 family. (361 aa)    
Predicted Functional Partners:
plu2403
NDK domain-containing protein; Truncated gene. Highly similar to C-terminal region of transposase; Belongs to the NDK family.
   
   0.778
plu2405
TauD domain-containing protein; Unnamed protein product; Hypothetical protein.
       0.773
plu2406
Unnamed protein product; Unknown protein.
       0.773
wblM
WblM protein; Similar to TrsG which plays a putative role in galactose modification.
 
  
 0.683
pbgP3
PbgP3 protein; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the C-terminal section; belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily.
  
  
 0.524
wblP
WblP protein.
 
  
 0.510
pbgP2
PbgP2 protein; Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides (By similarity). Essential for virulence in insects; Belongs to the glycosyltransferase 2 family.
 
  
 0.509
wblF
WblF protein; Similar to putative glycosyl transferase.
 
  
 0.484
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
 
 0.464
wblA
WblA protein; Similar to putative UDP-glucose/GDP-mannose dehydrogenase.
 
  
 0.458
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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