Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2408AMP-binding domain-containing protein; Unnamed protein product; Some similarities with D-alanine-D-alanyl carrier protein ligase. (461 aa)    
Predicted Functional Partners:
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
 
0.942
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
0.844
plu3921
Uncharacterized protein; Truncated gene. Some similarities with polyketide synthase type I.
 
 0.812
plu2409
Unnamed protein product; Some similarities with unknown protein.
       0.773
plu2410
Unnamed protein product; Unknown protein.
       0.773
plu1212
Carrier domain-containing protein; Unnamed protein product; Some similarities with polyketide synthase PksC and mycosubtilin synthetase chain MycA. Putative transmembrane protein.
 
 0.765
plu4510
AMP-binding domain-containing protein; Unnamed protein product; Similar to AMP-ligase.
  
     0.709
plu1885
PKS_KS domain-containing protein; Unnamed protein product; Similar to polyketide synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  0.701
plu3923
Condensation domain-containing protein; Unnamed protein product; Weakly similar to synthetases (pyoverdine synthetase B, actinomycin synthetase II AcmB, mycosubtilin synthetase chain MycB...).
 
  
 0.697
plu2407
Unnamed protein product; Hypothetical gene.
       0.693
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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