Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2412Unnamed protein product; Some similarities with unknown protein. (355 aa)    
Predicted Functional Partners:
wzc
Tyrosine-protein kinase Wzc.
  
 
 0.980
wblF
WblF protein; Similar to putative glycosyl transferase.
  
  
 0.600
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
     
 0.558
wblM
WblM protein; Similar to TrsG which plays a putative role in galactose modification.
  
  
 0.518
plu4036
Arabinose 5-phosphate isomerase; Unnamed protein product; Highly similar to putative isomerase YrbH of Escherichia coli.
     
 0.488
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
     
 0.447
plu3934
Unnamed protein product; Highly similar to unknown protein of Photorhabdus luminescens and some similarities with the central region of beta-xylosidase.
  
  
 0.429
plu3935
Unnamed protein product; Highly similar to unknown protein of Photorhabdus luminescens and some similarities with the central region of beta-xylosidase.
  
  
 0.429
plu2411
Glyco_trans_2-like domain-containing protein; Unnamed protein product; Some similarities with glycosyltransferase.
  
  
 0.401
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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