Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2420Unnamed protein product; Some similarities with dermonecrotizing toxin. Putative transmembrane protein. (1636 aa)    
Predicted Functional Partners:
plu0840
Unnamed protein product; Similar to enterotoxin encoded by the ast gene of Aeromonas hydrophila.
      
 0.532
ISPlu3S
Truncated gene. Weakly similar to transposase.
       0.440
plu3128
TcdA_TcdB_pore domain-containing protein; Unnamed protein product; Some similarities with different toxins (mcf_like protein).
     
 0.430
plu2288
ImcF-related_N domain-containing protein; Unnamed protein product; Some similarities with unknown protein and putative macrophage toxin.
      
 0.427
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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