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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu2433Unnamed protein product; Similar to Evf protein of Erwinia carotovora. (275 aa)    
Predicted Functional Partners:
plu1561
Unnamed protein product; Similar to dictyostelium discoideum calcium-dependent cell adhesion molecule-1.
      
 0.522
plu2064
Big-1 domain-containing protein; Unnamed protein product; Weakly similar to putative invasin and adhesin.
      
 0.522
pllA
Lectin A; Lectin that specifically binds alpha-galactoside-terminating glycoconjugates. Shows high apparent binding to the alpha-Gal epitope (Gal-alpha-1,3-Gal-beta-1,4-GlcNAc terminating glycans) as well as to Gal-alpha-1,4-GlcNAc and Gal-alpha-1,3-GalNAc. Gal-alpha-1,3-GalNAc may be one natural ligand bound by PllA both in the nematode symbiont and in infected insects.
      
 0.522
plu2057
Unnamed protein product; Some similarities with putative adhesin, invasin and intimin.
      
 0.520
plu3775
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to the transcriptional activator protein ExsA/VirF.
      
 0.520
acnA
Aconitate hydratase 1 (citrate hydro-lyase 1) (aconitase 1); Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
       0.475
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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