Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2455Unnamed protein product; Some weak similarities with calpain cysteine protease. (384 aa)    
Predicted Functional Partners:
plu4144
JmjC domain-containing protein; Unnamed protein product; Some similarities with unknown eucaryotic protein.
  
     0.718
plu3526
JmjC domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
  
     0.713
plu3369
ANK_REP_REGION domain-containing protein; Unnamed protein product; Some similarities with phospholipase A accessory protein.
  
    0.581
ppxA
Photopexin A.
  
     0.565
plu0936
Thymidylate_kin domain-containing protein; Unnamed protein product; Some similarities with thymidylate kinase.
 
     0.470
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
  
 0.431
plu2456
YrdC-like domain-containing protein; Unnamed protein product; Highly similar to probable translation factor YciO of Escherichia coli; Belongs to the SUA5 family.
       0.419
trpH
Protein TrpH.
       0.405
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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