Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu2480OMP_b-brl domain-containing protein; Unnamed protein product; Similar to Ail protein precursor of Yersinia (OmpX). (175 aa)    
Predicted Functional Partners:
nlpB
Lipoprotein-34 precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 
 0.852
plu2029
Unnamed protein product; Similar to unknown protein YecF of Escherichia coli.
  
     0.774
plu2166
Unnamed protein product; Similar to unknown protein YdgH precursor of Escherichia coli.
  
     0.774
plu0289
Unnamed protein product; Similar to putative lipoprotein YidQ precursor of Escherichia coli.
  
     0.773
plu4771
Unnamed protein product; Similar to unknown protein YiiQ precursor of Escherichia coli.
  
     0.773
holE
DNA polymerase III, theta subunit.
  
     0.772
plu3995
Unnamed protein product; Similar to unknown protein YqjE of Escherichia coli.
  
     0.771
atpI
ATP synthase protein I.
  
     0.770
plu4132
Unnamed protein product; Similar to putative lipoprotein YjeI precursor of Escherichia coli.
  
     0.770
plu0305
GAPES3 domain-containing protein; Unnamed protein product; Similar to putative membrane protein YhjK of Escherichia coli.
  
     0.769
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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