Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu2482STAS domain-containing protein; Unnamed protein product; Similar to sulfate permease family protein. (585 aa)    
Predicted Functional Partners:
plu4416
Unnamed protein product; Similar to protein-tyrosine phosphatase.
  
 
   0.667
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
 
 0.643
ispZ
Probable intracellular septation protein IspZ; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.533
sbcD
Nuclease sbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.531
plu4544
HTH Mu-type domain-containing protein; Unnamed protein product; Some similarities with the N-terminal region of the repressor protein CI and with Mu transposase.
  
     0.518
plu3647
Unnamed protein product; Similar to unknown protein.
  
     0.513
plu3093
Unnamed protein product; Highly similar to putative transport protein YfbS of Escherichia coli.
 
 
 0.486
hmuR
Hemin receptor precursor.
  
   
 0.482
chb
Chitobiase precursor (N-acetyl-beta-glucosaminidase)-beta-N- acetylhexosaminidase).
  
     0.446
plu2484
HotDog ACOT-type domain-containing protein; Unnamed protein product; Highly similar to putative acyl-CoA thioester hydrolase YciA (P14 protein) of Escherichia coli.
       0.445
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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