STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppFOligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (333 aa)    
Predicted Functional Partners:
oppC
Oligopeptide transport system permease protein OppC.
 0.999
oppB
Oligopeptide transport system permease protein OppB.
 
 0.999
oppD
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
0.994
oppA2
Periplasmic-binding protein precursor OppA2.
 
 
 0.990
oppA1
Periplasmic-binding protein precursor OppA1.
 
 
 0.985
plu2212
SBP_bac_5 domain-containing protein; Unnamed protein product; Highly similar to oligopeptide-binding protein precursor OppA.
 
 
 0.978
plu2350
SBP_bac_5 domain-containing protein; Unnamed protein product; Similar to oligopeptide-binding protein precursor.
 
 
 0.978
mppA
Periplasmic murein peptide-binding protein precursor.
 
 
 0.976
dppC
Dipeptide transport system permease protein DppC.
 
 0.954
dppB
Dipeptide transport system permease protein DppB.
 
 
 0.904
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.